Step by step instructions on how to relabel, organize, store, and analyze camera trap photographs without entering data by hand from a keyboard.

The library file needed to run all the programs.

Add user error checking.

Add user error checking.

CreateInput creates InputTemp.txt from an existing AllPictures.txt file or an AllPictures.txt file created by program Concatenate.

Steps for correcting camera start/stop times.

OccupancyMatrix creates occupancy matrices for use in program Presence.

SpecialRenamer corrects files with the wrong time and relabels burst files uniquely.

GroupAnalyze groups camera locations and presents results by group instead of by camera like DataAnalyze does.

GroupOccupancy is the analog of OccupancyMatrix. GroupOccupancy produces occupancy matrices using grouped locations.

Concatenate concatenates AllPictures.txt files. Duplicate lines are eliminated.

Corridor is used to analyze what species travel between two locations that are ends of a corridor. Species traverse time and activity patterns are calculated in the corridor.

AbundanceMatrix works like OccupancyMatrix but instead of absence-presence 0-1 data, the number of independent pictures is computed.

Persistence produces a probability density function of a species visit to a location.

Networks of automatic cameras are producing many thousands of images over modest time periods. For example, 35 cameras at Sevilleta National Wildlife Refuge in New Mexico, USA have produced more than 1.9m useful images since June, 2009. A US Fish and Wildlife monitoring program is producing about 30,000 images per week. Although image file retrieval and storage is trivial, data entry and analysis are both time consuming and error prone since data is most often entered by hand from a keyboard into a spreadsheet. Our objectives were to increase data entry speed while minimizing data entry errors, easily run data analysis, and enable data from multiple locations to be concatenated and analyzed as a single data set. These objectives are achieved by eliminating the task of hand data entry via a keyboard, and managing user interactions with image file data through the use of a suite of open software tools. Error-checking is also automatic. Here we update the methodology described in Harris et al. (2010) by providing a step-by step guide for automatic camera trap data storage and analysis without entering data by hand from a keyboard. This methodology is already in use and is benefiting from an established user community. The programs are available free on http://www.smallcats.org/CTA-executables.html.